
IF Dendrites & Axons
Detect neurons, segment dendrites and axons, and quantify dendrite number per neuron and total dendrite and axon length.
intracellular analysis
single-cell analysis
neuroscience
cell culture
dendrites, neuron, axon, neuroscience, cell culture, primary dentrites, secondary dentrites, branches

The IF Dendrites & Axons App identifies neuronal cells and their dendrites as well as their axon based on appropriated markers. It quantifies the number of dendrites branching out from a specific neuron. As outcome total number of dendrites per neurons as well as length of dendrites and axons are provided.
Image courtesy of Thomas Bastian, PhD, University of Minnesota

Original Image

Nuclei detection

Dendrites detection

Axon detection

Dendrites and axon detection
cell culture

Webinar
19 Nov, 2024
Quantification of p-H2AX Foci in Co-cultured Cells Exposed to Radiation, Livia Sima
neuroscience

White Paper
30 Mar, 2026
Understanding NeuroCOVID-19: SARS-CoV-2 Disrupts Astrocyte Homeostatic Functions
single-cell analysis

White Paper
30 Mar, 2026
Understanding NeuroCOVID-19: SARS-CoV-2 Disrupts Astrocyte Homeostatic Functions
intracellular analysis

Application Note
14 Oct, 2024
Quantitative Analysis of Cultured Cells
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
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Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.

