Checkpoint Molecules Predict Response to Immunotherapy in Cancer

FEATURED PUBLICATION

Checkpoint Molecules Predict Response to Immunotherapy in Cancer
cells

Heij et al. investigated the expression of checkpoint molecules in the tumor microenvironment of intrahepatic cholangio-carcinoma. They found that co-expression patterns of checkpoint molecules such as PD-L1 and TIGIT correlate with metastases and poor prognosis. TissueFAXS and StrataQuest were used to image the mIF-stained samples and assess protein expression.

Read the Publication
Community-developed Checklists Enhance Reproducibility of Microscopy Images

FEATURED PUBLICATION

Community-developed checklists for publishing images and image analyses
Nature Methods

QUAREP-LiMi is an initiative focused on promoting quality assessment and reproducibility for instruments and images in light microscopy. Dr. Rupert Ecker, CEO of TissueGnostics, participated in developing standardized guidelines for best practices in image communication. These checklists offer key recommendations on image formatting and annotation among others.

Read the Publication
AI-Assisted Analysis of ‘Anti-/Pro-Tumor’ Profiles for Pancreatic Adenocarcinoma

FEATURED PUBLICATION

AI-Assisted Analysis of ‘Anti-/Pro-Tumor’ Profiles for Pancreatic Adenocarcinoma
Cancer Biology & Medicine

To predict survival of patients with pancreatic adenocarcinoma, Zhou et al. performed an AI-assisted comprehensive analysis of CD8+ T cells, cancer stem cells (CSCs), and tumor budding (TB). They used StrataQuest image analysis software to automatically detect and quantify tumor-infiltrating CD8+ T cells, CD133+ CSCs, and CK19+ TB.

Read the Publication
Characterization of the Spatial Immune Context of Lung Cancer

FEATURED PUBLICATION

Characterization of the Spatial Immune Context of Lung Cancer
International Journal of Molecular Sciences

In a recent study, Imamura et al. investigated the role of debrin-expressing tumor infiltration lymphocytes (TIL) in lung cancer. The high-end image analysis solution, StrataQuest, was used for the automatic tissue classification and localization of CD3+/debrin+ cellular phenotypes in the tumor cell nest, as well as in the stroma.

Read the Publication
COL8A1 Promotes Tumor in Pancreatic Ductal Adenocarcinoma

FEATURED PUBLICATION

COL8A1 Promotes Tumor in Pancreatic Ductal Adenocarcinoma
Matrix Biology

Yan et al. investigated several collagen subtypes involved in pancreatic ductal adenocarcinoma desmoplasia. Based on this study, COL8A1 was suggested as a new marker for predicting poor chemotherapy responsiveness and survival. The TissueFAXS imaging platform and StrataQuest analysis solution were used to image and segment morphological structures.

Read the Publication
Erk1/2-Dependent HNSCC Cell Susceptibility to Erastin-Induced Ferroptosis

FEATURED PUBLICATION

Erk1/2-Dependent HNSCC Cell Susceptibility to Erastin-Induced Ferroptosis
cells

Savic et al. investigated the Erk 1/2 pathway role in ferroptosis induction by targeting xCT protein during the treatment of HNSCC. They found erastin to be a potent ferroptosis inducer which is strongly dependent on Erk 1/2 kinases. TissueFAXS and HistoQuest were used to image the IHC-stained samples and calculate the percentage of xCT-positive cells.

Read the Publication
Tumor Microenvironment Characterization of Rectal Cancer

FEATURED PUBLICATION

Case Report: Tumor Microenvironment Characterization of Rectal Cancer
Frontiers in Immunology

Song et al. published a case study investigating the genetics and tumor microenvironment of a rectal cancer patient with MSS/PD-L1-negative recurrent hepatopulmonary metastasis. TissueFAXS and StrataQuest were used to image stained tissue samples and to assess tumor infiltrating immune cells using, among others, CD4, CD8, CD163, PD1, and PD-L1 as markers.

Read the Publication
Adverse Effects of Single

FEATURED PUBLICATION

The impact of HIV infection on the frequencies, function, spatial localization and heterogeneity of TFRs within human lymph nodes
BMC Immunology

Mahlobo et al. published a study in BMC Immunology addressing the effect of HIV infections on frequencies, function, spatial localization and heterogeneity of T follicular regulatory cells (TFRs) in human lymph nodes. TFRs within lymph node tissues were quantified using TissueFAXS i PLUS and TissueQuest.

Read the Publication
Temporal changes

FEATURED PUBLICATION

Temporal changes in T cell subsets and expansion of cytotoxic CD4+ T cells in the lungs in severe COVID-19
Clinical Immunology

Kaneko et al. published a study in the Clinical Immunology journal focusing on the quantitative analysis of T-cell subset alterations in thoracic lymph nodes and lung samples of COVID-19 patients. With the help of TissueFAXS and StrataQuest, the authors were first to show the expansion of cytotoxic CD4+ T cells in the lungs of patients with severe COVID-19.

Read the Publication
Spatial Distribution

FEATURED PUBLICATION

Spatial distribution and functional analysis define the action pathway of Tim-3/Tim-3 ligands in tumor development
Molecular Therapy

In a recent publication in the journal Molecular Therapy, Wang et al (Cheeloo Medical College of Shandong University) combine multiplexing and TissueGnostics’ image cytometry solutions for the assessment of the expression level of Tim-3, a well-known immune checkpoint, in tumor infiltrating lymphocytes. This study nominates Tim-3 as a potential target for cancer immunotherapy.

Read the Publication
Multi-Antigen Imaging

FEATURED PUBLICATION

Multi-Antigen Imaging Reveals Inflammatory DC, ADAM17 and Neprilysin as Effectors in Keloid Formation
International Journal of Molecular Sciences

In a recent publication in the MDPI - International Journal of Molecular Sciences, Rath et al (University Hospital Heidelberg) combine multiplexing, TissueGnostics’ image cytometry and in-depth data mining to characterize the immune microenvironment including spatial relationships within keloid lesions. Using this approach, the authors were able to nominate potential therapeutic targets.

Read the Publication
SynNotch-CAR T

FEATURED PUBLICATION

SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma
Science Translational Medicine

A recent publication from the group of Choe et al. (University of California, UCSF) published in Science Translational research is exploring the therapeutic effectiveness of SynNotch-CAR T cells in a PDX glioblastoma mouse model. T cells in-situ were imaged/assessed by TissueFAXS and quantified via StrataQuest.

Read the Publication
CpG Methylation Influence on Protease Serine 3 Isoforms in Lung Cancer

FEATURED PUBLICATION

CpG Methylation Influence on Protease Serine 3 Isoforms in Lung Cancer
Acta Pharmaceutica Sinica B

Lin et al. investigated the UHRF1/DNMT1–MZF1 axis in the context of CpG methylation of protease serine 3, a protein with several isoforms that show paradoxical effects. To differentiate the isoforms, the researchers employed 7-marker multiplex staining and performed a quantitative analysis using TissueFAXS SPECTRA and StrataQuest.

Read the Publication
previous arrow
next arrow

Filter publications

Customer Publications (A total of 3421 papers published)

Results 31 - 40 of 3421
31
Methods for Detecting Neutrophil Extracellular Trap Formation: From Microscopy to High-Throughput Technologies.

F Zambrano, P Uribe, M Schulz, C Hermosilla, A Taubert, R Sanchez

International Journal of Morphology (Universidad de la Frontera) Chile , 01 September 2025

Medical Image Analysis

Key words: NETosis; Neutrophil extracellular traps; Detection method

32
Effect of human adipose stem cell-derived mitochondrial transplantation on the activity of chronically injured anterior cruciate ligament cells

HL Lo, YH Huang, YC Lin, WW Li, SC Wu, PH Chou, CC Lu

Bone & Joint Research (The British Editorial Society of Bone & Joint Surgery) Taiwan , 01 September 2025

Osteology

Organism: Rabbit

Tissue: ACL

Pathological State: Tear

33
GNAS/PKA signaling promotes aberrant osteochondral differentiation of Gli1+ tendon sheath progenitors

L Chen, C Peng, L Chai, R Zhang, C Zhu, H Wang, Q Cheng, Y Yan, C Shen, H Zheng, J Yang, H Fan, C Kann

EMBO Journal (Embo Press) China , 01 September 2025

Osteology

Organism: Human

Tissue: Tendon

Pathological State: Tear

34
Blockage of SUMO E1 enzyme inhibits ocular lens fibrosis by mediating SMAD4 SUMOylation

M Hou, Y Ding, X Bao, L Liu, Y Wang, M Wu

Genes & Diseases (Elsevier) China, USA , 28 August 2025

Opthalmology

Key words: Lens capsular fibrosis, Lens epithelial-mesenchymal transition, SMAD4, SUMOylation, SUMO E1 inhibitor

Organism: Mouse

Tissue: Eye

35
Sublethal executioner caspase activation in hepatocytes promotes liver regeneration through the JAK/STAT3 pathway

Z Cao, L Qin, K Liu, C Yao, E Li, X Hao, M Wang, B Jiang, Y Zou, H Hu, Q Liu, C Shao, Y Gong, G Sun

PLOS Biology (PLOS) China , 28 August 2025

Hepathology

Key words: Hepatocytes, Apoptosis, Liver and spleen scan, Homeostasis, Regeneration, Hyperexpression techniques, Body weight, Genetrically modified animals

Organism: Mouse

Tissue: Liver

Pathological State: Liver Injury

36
Chemokine Receptor Profiles as Predictors of Survival and Early Progression in Follicular Lymphoma

A Zupo, K Pansy, L Gaksch, J Waldhart, A Brunner, J Strobl, MP Szmyra-Polomka, S Haingartner, PV Tomazic, HT Greinix, B Uhl, J Feichtinger, G Stary, J Haybaeck, FR Vagena, M Zacharias, CS Beham-Schmid, P Neumeister, KT Prochazka, AJA Deutsch

ejHaem (Wiley Online Library) Austria , 28 August 2025

Oncology

Organism: Human

Tissue: Tonsil

Pathological State: Cancer

37
Clinicopathologic relevance of EpCAM and CD44 in pancreatic cancer: insights from a meta-analysis

BB Ungureanu, DI Gheonea, AS Turcu-Stiolica, M Schenker, D Pirici, CC Vere, A Fierut, A Saftoiu

Stem Cell Research & Therapy (BMC) Romania , 27 August 2025

Oncology

Key words: CSC, EpCAM, CD44, Pancreatic cancer, Meta-analysis

Organism: Human

Tissue: Pancreas

Pathological State: Cancer

38
Mitochondrial ROS drive foam cell formation via STAT5 signaling in atherosclerosis

L Boccuni, F Marka, M Salzmann, A Schirripa, E Ableitner, M Siller, M Brekalo, P Haider, S Stojkovic, C Neumayer, T Örd, K Kollmann, A Assinger, T Decker, T Köcher, MB Fischer, M Mußbacher, A Bergthaler, C Hengstenberg, BK Podesser, MU Kaikkonen, J Wojta, PJ Hohensinner

Science Advances (Science) Austria, Finland , 27 August 2025

Cardiology

Organism: Mouse

Tissue: Heart

Pathological State: Atherosclerosis

39
Impact of PM2.5 Emitted by Wood Smoke on the Expression of Glucose Transporter 1 (GLUT1) and Sodium-Dependent Vitamin C Transporter 2 (SVCT2) in the Rat Placenta: A Pregestational and Gestational Exposure Study

F Villarroel, E Ramírez, N Ponce, F Nualart, P Salinas

Antioxidants (MDPI) Chile , 26 August 2025

Reproductive Medicine

Key words: PM2.5; placental transporters; GLUT1; SVCT2; oxidative stress; air pollution; pregnancy

Organism: Rat

Tissue: Prostata

Pathological State: Chemical Exposure

40
A developmental gradient of COUP-TFI expression regulates the relative size of hippocampus dorsal and ventral subregions

CS Tseng, Z Zhuang, HW Hsing, CM Lee, TT Hsu, YK Pan, YP Hsueh, BC Chen, SJ Chou

PLOS Biology (PLOS) Taiwan , 25 August 2025

Neuroscience

Organism: Mouse

Tissue: Brain

Results 31 - 40 of 3421

LogoOrangewhite2025

TissueGnostics GmbH
Taborstraße 10/2/8
1020 Vienna, Austria
+43 1 216 11 90
This email address is being protected from spambots. You need JavaScript enabled to view it.

Contact us

About Us

TissueGnostics provides advanced solutions for whole-slide imaging and image analysis in biological and clinical research. Our products help researchers to scan and analyze complex tissue samples, enabling more detailed insights into tissue structure, cellular interactions, and spatial cell landscape.

 

Keep in Touch

Be the first to hear about the latest scientific updates