IF Cellular microenvironment
Determine phenotypes of specific IF-stained cell populations, analyze spatial relationships to neighboring cells and metastructures (e.g. vessels, tumors), and perform proximity and infiltration analyses.
phenotyping, phenotype interactions, proximity map, spatial landscape, immune cells, tumor, colon cancer, TMA, Foxp3, CD4, CK, PD-1, T regulatory cells, fluorescence
The IF Cellular Microenviroment App allows to determine the cellular phenotype of specific IF stained cell populations and establishes their spatial relationship between each other, their neighbour cells/cell populations as well as the one with metastructures (e.g. blood vessels, tumors) in their vicinity. It is especially suited for proximity and infiltration analyses.
Original image
Nuclei segmentation
Epithelium detection
Phenotype detection
White Paper
18 Oct, 2017
DNA-Binding of the Tet-Transactivator Curtails Antigen-Induced Lymphocyte Activation in Mice
White Paper
17 Apr, 2019
Characterizing the Complex Microenvironment of Individual Immune Cells
White Paper
17 Oct, 2025
Integrative Multiomics Approach Unveils Systemic Dysfunction in Colorectal Cancer (CRC)
White Paper
17 Oct, 2025
Integrative Multiomics Approach Unveils Systemic Dysfunction in Colorectal Cancer (CRC)
Blog Post
17 May, 2023
An Intro to Deep Learning in Biomedical Imaging
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
Related Apps
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
