IF Cytoskeleton
Detect cytoskeletal structures by specific stain, identify cytoplasm with additional markers, and export filament count (inside, outside, membrane), filament length, and total filament area.
actin, cytoskeleton, cortical fibres, microfilaments, stress fibres, cell culture, fluorescence
The IF Cytoskeleton App detects cytoskeletal structures based on a specific stain. Used with other stains the cell cytoplasm can be detected. The number of cytoskeletal filaments inside of the cell, outside or on the cell membrane can be exported, as well as filament length and total filament area.
Application Note
14 Oct, 2024
Quantitative Analysis of Cultured Cells
Webinar
12 Nov, 2025
TG Academy Webinar - Decoding the language of cancer with SCellBOW
Application Note
14 Oct, 2024
Quantitative Analysis of Cultured Cells
We support the following file formats:
- TissueFAXS (aqproj)
- StrataFAXS II (vmic)
- PreciPoint (vmic, gtif)
- Generic BigTIFF Import
- Support for multipage BigTIFF files
- OME-TIFF
- JPEG, PNG, BMP, TIFF
- Zeiss (czi)
- Hamamatsu NanoZoomer (ndpi)
- Aperio (svs)
- Leica (scn)
- 3D HISTECH Pannoramic
- Mirax (mrxs)
- Olympus (vsi)
- More slide scanners to be added!
Related Apps
IF Cardio Cell Culture
Detect nuclei and identify cardiomyocytes in IF-stained cell cultures, reconstruct cytoplasmic masks, and quantify cardiomyocyte number, area, and marker intensity.
cardiology, cardiomyocytes, cell culture, fibroblasts, troponin red
Custom App development
Perfectly tailored image analysis solutions for your research.
You have a specific research question that needs to be answered? We offer custom development of image analysis pipelines for specific tasks, be it detection of cellular phenotypes or quantification of tissue structures. After discussing your goals with one of our experts, you will get a ready-to-use App and be a step closer to an impactful publication.
