StrataQuest Analysis Software

StrataQuest overview page

SQ Logo 2017 V2 small Context-based Analysis

StrataQuest is TGs most evolved image processing solution for both brightfield and fluorescence images.

It can automatically detect most tissular structures on a digital slide. It integrates detected objects into detailed context-based quantitative analysis.

The software is also an ideal image processing environment for clinicial researchers and dedicated image processors.

SQ APP Logo 2017 V1 small There are well over 50 StrataQuest APPs (modules, number constantly growing) which can be used for automated analysis.

StrataQuest is integrated into the following TG analysis systems:

Standalone  StrataQuest is also available as a standalone software.

 Importer  StrataQuest has importers for the following digital image or slide formats:

  • 3D Histech (.mrxs)
  • Hamamatsu (.ndpi)
  • Zeiss Axio Scan (.czi)
  • Yokogawa CQ1 Confocal scanner
  • Aperio scanners (.svs)
  • Leica (.scn)
  • Keyence
  • Perkin Elmer (.qptiff)
  • Images (.jpeg, .tif, .bmp, .png)

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Image Analysis Software

TG and Image Analysis Software

TissueGnostics has been based on the idea of providing the best tools for Tissue Cytometry - a scientific method for analysing cells in their morphological setting, as opposed to them being dissociated from it.

This has made it clear from the start that image analysis was going to be the tool of choice and so it is no wonder that TissueGnostics first product was image analysis software for samples stained with immunofluorescent markers, namely TissueQuest.

The first TissueQuest versions were appreciated for their robust, yet simple approach to a technology that was then known to scientists as being complex and requiring a lot of experience to use.

Nothing has changed since those days.

TGs Image Analysis Software portfolio has grown, but its products are still as easy to use.

They have been integrated into TGs automated scanning and analysis systems, but are also available as very much agnostic standalone tools.

HistoQuest Analysis Software

HistoQuest Brightfield Analysis Software

  HiQ Logo 2017 V2 small Analysis of immunohistochemical markers

HistoQuest provides three analysis modes:

  • Cell-based (nucleus, cytoplasm, membrane)
  • Stained areas
  • Small dots (e.g. CISH)
  • Skeleton algorithm for membrane staining

Context-based analysis can be done by manually drawing regions of interest. TMA can be analysed and also detected on imported files.

automation profile icon Analysis profiles can be created and used for automated analysis.

HistoQuest is integrated into the following TG scanning & analysis systems:

Standalone  HistoQuest is also available as a standalone software.

 Importer  HistoQuest has importers for the following digital image or slide formats:

  • 3D Histech (.mrxs)
  • Hamamatsu (.ndpi)
  • Zeiss Axio Scan (.czi)
  • Leica (.scn)
  • Aperio (.svs)
  • Images (.jpeg, .tif, .bmp, .png)

Continue Reading

StrataQuest Analysis Software

StrataQuest overview page

SQ Logo 2017 V2 small Context-based Analysis

StrataQuest is TGs most evolved image processing solution for both brightfield and fluorescence images.

It can automatically detect most tissular structures on a digital slide. It integrates detected objects into detailed context-based quantitative analysis.

The software is also an ideal image processing environment for clinicial researchers and dedicated image processors.

SQ APP Logo 2017 V1 small There are well over 50 StrataQuest APPs (modules, number constantly growing) which can be used for automated analysis.

StrataQuest is integrated into the following TG analysis systems:

Standalone  StrataQuest is also available as a standalone software.

 Importer  StrataQuest has importers for the following digital image or slide formats:

  • 3D Histech (.mrxs)
  • Hamamatsu (.ndpi)
  • Zeiss Axio Scan (.czi)
  • Yokogawa CQ1 Confocal scanner
  • Aperio scanners (.svs)
  • Leica (.scn)
  • Keyence
  • Perkin Elmer (.qptiff)
  • Images (.jpeg, .tif, .bmp, .png)

Continue Reading

TissueQuest Analysis Software

TissueQuest analysis software for fluorescent markers

TQ Logo 2017 V2 small Analysis of fluorescent markers

TissueQuest provides three analysis modes:

  • Cell-based (nucleus, cytoplasm, membrane)
  • Stained areas
  • Small dots (e.g. FISH)

Context-based analysis can be done by manually drawing regions of interest. TMA can be analysed and also detected on imported files.

automation profile icon Analysis profiles can be created and used for automated analysis.

TissueQuest is integrated into the following TG systems:

Standalone  TissueQuest is also available as a standalone software.

 Importer  TissueQuest has importers for the following digital image or slide formats:

  • 3D Histech (.mrxs)
  • Hamamatsu (.ndpi)
  • Zeiss Axio Scan (.czi)
  • Perkin Elmer (.qptiff)
  • Images (.jpeg, .tif, .bmp, .png)

Images to be analysed in TissueQuest must be provided as 8 bit monochrome greyscale images (one image per channel). Overlay (colored multichannel) images CAN NOT be analysed.

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